PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang01g11170.3
Common NameLR48_Vigan07g207800
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 169aa    MW: 18745.1 Da    PI: 4.5752
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang01g11170.3genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.83.5e-152441055
             AP2 10 kkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    +++g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a+++++g
  Vang01g11170.3  2 RNWGKWVSEIREPRK---KSRIWLGTFPTPEMAARAHDVAALSIKG 44
                    57**********843...6***********************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103220.112152IPR001471AP2/ERF domain
SMARTSM003804.0E-28158IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.9E-27153IPR001471AP2/ERF domain
CDDcd000184.11E-27154No hitNo description
PfamPF008471.2E-9244IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-18253IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MRNWGKWVSE IREPRKKSRI WLGTFPTPEM AARAHDVAAL SIKGNSAILN FPELAASLPR  60
PVSLAPRDVQ AAAAKAAHTD FRPLSSSVST ADLSAESEEL SQIIELPRLE TSYELGKEFV  120
FADSQDTWMY QPPIPWLQTT YDASQADDDI VVAETGLVNS FKSFLWDY*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150361e-143AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014503815.11e-100PREDICTED: ethylene-responsive transcription factor TINY-like
SwissprotQ9LYD39e-58DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A0S3RMX51e-105A0A0S3RMX5_PHAAN; Uncharacterized protein
TrEMBLA0A0L9V0T91e-105A0A0L9V0T9_PHAAN; Uncharacterized protein
STRINGGLYMA14G22740.11e-80(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.15e-59ERF family protein
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]